PBIL

Search Families by Cross Taxa

BBE contribution to PBIL in Lyon, France

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Usage Example

Taxon selection

List 1: Taxa to be selected: (see example)

Search Type:

List 2: Taxa to be excluded: (see example)

Protein databank Nucleotide databank
Database:
Number of Sequences
by family
Number of Taxa
by family
List name:

Taxonomy helper

Data base:

Template: Tree depth:

Search:



You may use this page to check the taxonomy of the taxa you are interested in.

First choose a database, then give a species/taxon name and a depth for tree display. For example you may select
mammalia with a depth equal
to 3 in GenBank.

Warning:
you may give only one full species name at a time.

This form allows you to retrieve all gene families that are shared by a given set of taxa (list 1) and that are not associated with another set of taxa (list2). Any taxonomic level can be used and mixed to compose the query (e.g., Homo sapiens, Primate, Mammalian,etc. ).
The first set of taxa (list 1) can be used for an "inclusive" or "exclusive" selection of families.

Warning: each line of the "Taxa list" area must contain only a single taxon name.

User reference :654671522

If you have problems or comments...

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